Find your gene regulatory pathways, biomarkers, and drug targets in a few clicks
No-coding
Bioinformatics
Academy
For molecular biologists and clinical researchers
Choose your training
Download TRANSFAC and do whatever you like
Software demo: Coffee break with TRANSFAC
This webseminar will give a brief overview of TRANSFAC® with the focus on the flat file download release. In the TRANSFAC® flat file download, the Match™ tool can be used in the command line or the PWMs can be used with third-party tools or with tools of the user. The following main questions will be in the focus of this seminar:
- Factor-site binding
- Factor-factor interaction
- Combinatorial gene regulation
- Gene regulatory networks
- Promoters & Enhancers
- Factor classification
- TF-binding motifs (PWMs)
- TF-binding site prediction
Schedule
Promoter hunting with TRANSFAC
Lectures and hands-on training
Become a professional promoter hunter within this four day intensive course on gene regulation analysis. Gain an understanding of the principles underlying the regulatory code of eukaryotic genes, and explore the techniques for predicting and analyzing promoters and enhancers.
TRANSFAC license is included throughout the whole course duration.
The following main questions will be in the focus of this course:
- Principles of gene regulatory code
- How do I find promoters and enhancers of the genes under study?
- Basic principles of search for TFBS (Transcription Factor Binding sites)
- Combinatorial analysis of gene regulation: complexes of TFBS acting together
- Search for tissue-specific TF target genes
- Working with multi-omics data: how to compile a gene set for further promoter analysis (what you can do with RNA-seq, ChIP-seq, ATAC-seq, proteomics, metabolomics, DNA methylation, genome sequencing data)
- Mutation effect on sites: site gains and losses
- Selection of site search profiles (collection of positional weight matrices to perform the search for TFBS)
Schedule
* FREE for TRANSFAC licensed users
Key benefits
No-coding bioinformatics
Perform cutting edge bioinformatics analysis in a user-friendly interface with no programming skills needed
Multi-omics
Learn how to process and integrate various omics data types in your analysis
Promoter analysis
Become the gene regulation expert with deep understanding of transcription factors interplay in various conditions
Pathway analysis
Discover the master regulators governing the studied biological processes through intracellular signaling pathways
Disease molecular mechanisms
Identify prospective biomarkers and drug targets for the pathologies of your interest by performing integrated promoter and pathway analysis
Gold standard tools and databases
Learn how to use the best-in-class knowledge bases on genes, proteins, transcription factors, pathways, drugs, and their targets, together with integrated tools
Testimonials
Coming soon
My way from promoters to pathways
Paid course, €299 per seat before VAT. Date and time will be announced soon.
In this course we will:
Our lecturers
