CRISPR Synthetic Lethality screens and TRANSFAC Pathways

Q&A: Coffee break with TRANSFAC

This event was held on November 26th, 2024

FREE online seminar

Seminar Description

In this webinar Prof. Dr. Alexander Kel, the CEO and CSO of geneXplain GmbH, will address the in-depth exploration of how CRISPR gene knockouts can be leveraged for TRANSFAC pathway discovery and the identification of cancer master regulators within the TRANSFAC network.

This seminar will highlight the utility of CRISPR synthetic lethality screens in discovering drug targets and understanding disease mechanisms within TRANSFAC pathways. Alexander will showcase a case study where a synthetic lethal CRISPR screen identified a cancer cell-intrinsic role of PD-L1 in regulating vulnerability to ferroptosis in Homo sapiens (GSE268533). Despite the success of PD-1/PD-L1 inhibitors in cancer therapy, only a minority of patients benefit from these treatments. The presented study uses a genome-wide CRISPR screen to explore the intrinsic function of PD-L1 in head and neck squamous cell carcinoma (HNSCC). This seminar will focus on how synthetic lethality screens, combined with the TRANSFAC database, can uncover pathways and regulatory mechanisms that highlight PD-L1’s role in cancer resilience. Additionally, we’ll discuss how these insights can enhance therapeutic strategies by targeting intrinsic PD-L1 functions.

The following main topics will be in the focus of this webinar:

  • Genome-wide CRISPR/Cas-9 synthetic lethality screens to discover anti-cancer drug targets
  • Analysis of GSE268533 dataset of head and neck squamous cell carcinoma (HNSCC)
  • Mapping the results of CRISPR/Cas-9 synthetic lethality screens on TRANSFAC pathways
  • Finding master-regulators to resolve resistance to PD-L1 inhibitors

What you will learn in this webseminar 

  • How anti-cancer drug targets can be discovered with genome-wide CRISPR/Cas-9 synthetic lethality screens
  • How TRANSFAC pathways can be applied for finding master-regulators to resolve resistance to PD-L1 inhibitors

Seminar Schedule

The session has started on November 26th at 6 PM CET with a lecture from Prof. Dr. Alexander Kel (approx. 1 hour) and was continued with a Q&A session addressing the questions coming from the attendees of the online event (up to 30 minutes).

What You Get

  • 1 hour lecture on CRISPR Synthetic Lethality screens and TRANSFAC Pathways
  • 30 minutes interactive Q&A session addressing your questions
  • Time-unlimited access to the video record of the session

What others say about our educational programs and software

Click on the images to enlarge

The Lecturer

  • Alexander Kel received his Ph.D. in Bioinformatics, Molecular Biology and Genetics in 1990 and has has over 35 years of research experience in Bioinformatics
  • He studied at Novosibirsk State University, obtaining an M.S. in biology with a focus on mathematical biology in 1985
  • His work spans numerous bioinformatics branches (sequence analysis, gene recognition, promoter/enhancer analysis and prediction, prediction of RNA secondary structure, analysis of signal transduction pathways, identification of drug targets, systems biology and systems medicine)
  • He is the originator of the “fuzzy puzzle” concept for gene regulatory regions modeling
  • Developed “upstream analysis” for identifying biomarkers and drug targets in various diseases
  • Participated in over 20 national and international research projects
  • Author of more than 130 scientific publications and several book chapters on bioinformatics and systems biology
  • CEO and CSO of geneXplain GmbH, Wolfenbüttel, Germany
  • Visiting Professor at Royal College of Surgeons in Ireland (RCSI), Dublin, Ireland

Prerequisites

Basic knowledge of biochemistry and molecular biology. No programming skills are required.

To Whom It Might Be Interesting

  • Biologists and bioinformaticians working with CRISPR Synthetic Lethality screens
  • Biologists, bioinformaticians, or medical researchers working in the area of cancer research
  • Students interested in gene regulation aspects

FAQ

That’s ok! All registered course attendees will receive access to the video record of the session together with the presentation materials. 

You can ask your questions live during the online event using the Q&A section of the online webinar, or you can send us your questions in advance using the form on this page and Prof. Dr. Alexander Kel will address them at the online event.

Sure! All duly licensed users will be able to repeat all steps of the analysis that will be shown by Prof. Dr. Alexander Kel during the online event using their TRANSFAC full package accounts.

Ask Your Question

Ask your question